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BGE publications in 2017

Published on 4 August 2022
Agaesse G, Barbollat-Boutrand L, Sulpice E, Bhajun R, Kharbili ME, Berthier-Vergnes O, Degoul F, de la Fouchardiere A, Berger E, Voeltzel T, Lamartine J, Gidrol X and Masse I
A large-scale RNAi screen identifies LCMR1 as a critical regulator of Tspan8-mediated melanoma invasion.
Oncogene, 2017, 36(4): 446-457

Aillaud C, Bosc C, Peris L, Bosson A, Heemeryck P, Van Dijk J, Le Friec J, Boulan B, Vossier F, Sanman LE, Syed S, Amara N, Couté Y, Lafanechère L, Denarier E, Delphin C, Pelletier L, Humbert S, Bogyo M, Andrieux A, Rogowski K and Moutin MJ
Vasohibins/SVBP are tubulin carboxypeptidases (TCP) that regulate neuron differentiation.
Science, 2017, 358(6369): 1448-1453

Alfieri A, Sorokina O, Adrait A, Angelini C, Russo I, Morellato A, Matteoli M, Menna E, Erba EB, McLean C, Armstrong JD, Ala U, Buxbaum JD, Brusco A, Couté Y, De Rubeis S, Turco E and Defilippi P
Synaptic interactome mining reveals p140cap as a new hub for PSD proteins involved in psychiatric and neurological disorders.
Frontiers in Molecular Neuroscience, 2017, 10: Article number 212

Allier C, Morel S, Vincent R, Ghenim L, Navarro F, Menneteau M, Bordy T, Herve L, Cioni O, Gidrol X, Usson Y and Dinten JM
Imaging of dense cell cultures by multiwavelength lens-free video microscopy.
Cytometry A, 2017, 91(5): 433-442

Arvin-Berod M, Desroches-Castan A, Bonte S, Brugière S, Couté Y, Guyon L, Feige JJ, Baussanne I and Demeunynck M
Indolizine-based scaffolds as efficient and versatile tools: Application to the synthesis of biotin-tagged antiangiogenic drugs.
ACS Omega, 2017, 2(12): 9221-9230

Barral S, Morozumi Y, Tanaka H, Montellier E, Govin J, de Dieuleveult M, Charbonnier G, Couté Y, Puthier D, Buchou T, Boussouar F, Urahama T, Fenaille F, Curtet S, Héry P, Fernandez-Nunez N, Shiota H, Gérard M, Rousseaux S, Kurumizaka H and Khochbin S
Histone variant H2A.L.2 guides transition protein-dependent protamine assembly in male germ cells.
Molecular Cell, 2017, 66(1): 89-101

Bartoli J, My L, Belmudes L, Coute Y, Viala JP and Bouveret E
The long hunt for pssR-looking for a phospholipid synthesis transcriptional regulator, finding the ribosome.
Journal of Bacteriology, 2017, 199(14): Article number e00202-00217

Beaumel S, Picciocchi A, Debeurme F, Vives C, Hesse AM, Ferro M, Grunwald D, Stieglitz H, Thepchatri P, Smith SME, Fieschi F and José Stasia M
Down-regulation of NOX2 activity in phagocytes mediated by ATM-kinase dependent phosphorylation.
Free Radical Biology and Medicine, 2017, 113: 1-15

Berdeu A, Momey F, Dinten JM, Gidrol X, Picollet-D'Hahan N and Allier C
Lensfree diffractive tomography for the imaging of 3D cell cultures. In Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXIV, edited by Brown TG, Cogswell CJ and Wilson T, Series: Proceedings of SPIE, Spie-Int Soc Optical Engineering, 2017, vol. 10070, Article Number UNSP 1007008

Berdeu A, Momey F, Laperrousaz B, Bordy T, Gidrol X, Dinten JM, Picollet-D'Hahan N and Allier C
Comparative study of fully three-dimensional reconstruction algorithms for lens-free microscopy.
Applied Optics, 2017, 56(13): 3939-3951

Berdeu A, Momey F, Laperrousaz B, Bordy T, Gidrol X, Dinten JM, Picollet-D'hahan N and Allier C
3D lens-free time-lapse microscopy for 3D cell culture In Advances in Microscopic Imaging, edited by Beaurepaire E, Pavone FS and So PTC, Series: Proceedings of SPIE, Spie-Int Soc Optical Engineering, 2017, vol.10414, p. Article number UNSP 104140C

Boruc J, Weimer AK, Stoppin-Mellet V, Mylle E, Kosetsu K, Cedeno C, Jaquinod M, Njo M, De Milde L, Tompa P, Gonzalez N, Inze D, Beeckman T, Vantard M and Van Damme D
Phosphorylation of MAP65-1 by Arabidopsis aurora kinases is required for efficient cell cycle progression.
Plant Physiology, 2017, 173(1): 582-599

Carapito C, Duek P, Macron C, Seffals M, Rondel K, Delalande F, Lindskog C, Freour T, Vandenbrouck Y, Lane L and Pineau C
Validating missing proteins in human sperm cells by targeted mass-spectrometry- and antibody-based methods.
Journal of Proteome Research, 2017, 16(12): 4340-4351

Charavay C, Segard S, Pochon N, Nussaume L and Javot H
Seedusoon: A new software program to improve seed stock management and plant line exchanges between research laboratories.
Frontiers in Plant Science, 2017, 8: Article number 13

Do LD, Chanson E, Desestret V, Joubert B, Ducray F, Brugière S, Couté Y, Formaglio M, Rogemond V, Thomas-Antérion C, Borrega L, Laurens B, Tison F, Curot J, De Brouker T, Lebrun-Frenay C, Delattre JY, Antoine JC and Honnorat J
Characteristics in limbic encephalitis with anti-adenylate kinase 5 autoantibodies.
Neurology, 2017, 88(6): 514-524

Duriez E, Masselon CD, Mesmin C, Court M, Demeure K, Allory Y, Malats N, Matondo M, Radvanyi F, Garin J and Domon B
Large-scale SRM screen of urothelial bladder cancer candidate biomarkers in urine.
Journal of Proteome Research, 2017, 16(4): 1617-1631

El Helou R, Pinna G, Cabaud O, Wicinski J, Bhajun R, Guyon L, Rioualen C, Finetti P, Gros A, Mari B, Barbry P, Bertucci F, Bidaut G, Harel-Bellan A, Birnbaum D, Charafe-Jauffret E and Ginestier C
miR-600 acts as a bimodal switch that regulates breast cancer stem cell fate through WNT signaling.
Cell Reports, 2017, 18(9): 2256-2268

El Kennani S, Adrait A, Shaytan AK, Khochbin S, Bruley C, Panchenko AR, Landsman D, Pflieger D and Govin J
MS_HistoneDB, a manually curated resource for proteomic analysis of human and mouse histones.
Epigenetics & Chromatin, 2017, 10(1): article number 2

Erales J, Marchand V, Panthu B, Gillot S, Belin S, Ghayad SE, Garcia M, Laforêts F, Marcel V, Baudin-Baillieu A, Bertin P, Couté Y, Adrait A, Meyer M, Therizols G, Yusupov M, Namy O, Ohlmann T, Motorin Y, Catez F and Diaz JJ
Evidence for rRNA 2'-O-methylation plasticity: Control of intrinsic translational capabilities of human ribosomes.
Proceedings of the National Academy of Sciences, U S A, 2017, 114(49): 12934-12939

Fabre E, Jeudy S, Santini S, Legendre M, Trauchessec M, Coute Y, Claverie JM and Abergel C
Noumeavirus replication relies on a transient remote control of the host nucleus.
Nature Communications, 2017, 8: Article number 15087

Garcia-Oliver E, Ramus C, Perot J, Arlotto M, Champleboux M, Mietton F, Battail C, Boland A, Deleuze JF, Ferro M, Coute Y and Govin J
Bdf1 bromodomains are essential for meiosis and the expression of meiotic-specific genes.
PLoS Genetics, 2017, 13(1): e1006541

Gidrol X, Laperrousaz B, Obeid P, Porte S, Gerbaud S, Kermarrec F, Haguet V, Dolega ME, Le Priol C, Allier C and Picollet D'Hahan N
Organoids-based high content screening in oncology.
Proceedings of the BioBeirut 7 International Meeting, Beyrouth, Liban, November 16-17 2017

Gilquin B, Jaquinod M, Louwagie M, Kieffer-Jaquinod S, Kraut A, Ferro M, Becher F and Brun V
A proteomics assay to detect eight CBRN-relevant toxins in food.
Proteomics, 2017, 17: 1-2

Gilquin B, Louwagie M, Jaquinod M, Cez A, Picard G, El Kholy L, Surin B, Garin J, Ferro M, Kofman T, Barau C, Plaisier E, Ronco P and Brun V
Multiplex and accurate quantification of acute kidney injury biomarker candidates in urine using Protein Standard Absolute Quantification (PSAQ) and targeted proteomics.
Talanta, 2017, 164: 77-84

Gloaguen P, Bournais S, Alban C, Ravanel S, Seigneurin-Berny D, Matringe M, Tardif M, Kuntz M, Ferro M, Bruley C, Rolland N, Vandenbrouck Y and Curien G
ChloroKB: A Web application for the integration of knowledge related to chloroplast metabolic network.
Plant Physiology, 2017, 174(2): 922-934

Grigorov B, Reungoat E, Gentil Dit Maurin A, Varbanov M, Blaising J, Michelet M, Manuel R, Parent R, Bartosch B, Zoulim F, Ruggiero F and Pecheur EI
Hepatitis C virus infection propagates through interactions between Syndecan-1 and CD81 and impacts the hepatocyte glycocalyx.
Cellular Microbiology, 2017, 19(5): e12711

Maes P, Donadio-Andréi S, Louwagie M, Couté Y, Picard G, Lacoste C, Bruley C, Garin J, Ichai P, Faivre J, Jaquinod M and Brun V
Introducing plasma/serum glycodepletion for the targeted proteomics analysis of cytolysis biomarkers.
Talanta, 2017, 170: 473-480

Mietton F, Ferri E, Champleboux M, Zala N, Maubon D, Zhou Y, Harbut M, Spittler D, Garnaud C, Courçon M, Chauvel M, D'Enfert C, Kashemirov BA, Hull M, Cornet M, McKenna CE, Govin J and Petosa C
Selective BET bromodomain inhibition as an antifungal therapeutic strategy.
Nature Communications, 2017, 8: Article number 15482

Mittler F, Obeïd P, Rulina AV, Haguet V, Gidrol X and Balakirev MY
High-content monitoring of drug effects in a 3D spheroid model.
Frontiers in Oncology, 2017, 7(DEC): Article number 293

Muller K, Courtois G, Ursini MV and Schwaninger M
New insight into the pathogenesis of cerebral small-vessel diseases.
Stroke, 2017, 48(2): 520-527

Pandey RR, Homolka D, Chen KM, Sachidanandam R, Fauvarque MO and Pillai RS
Recruitment of Armitage and Yb to a transcript triggers its phased processing into primary piRNAs in Drosophila ovaries.
PLoS Genetics, 2017, 13(8): e1006956

Picollet-D’hahan N, Dolega ME, Freida D, Martin DK and Gidrol X
Deciphering cell intrinsic properties: A key issue for robust organoid production.
Trends in Biotechnology, 2017, 35(1): 1035-1048

Picollet-D'hahan N, Laperrousaz B, Porte S, Obeid P, Tollance A, Kermarrec F, Belda-Marin C, Romero-Millan A, Haguet V, Martin DK and Gidrol X
Encapsulated organoids & organ-on-a-chip platform for cancer modeling.
Proceedings of the 2017 IEEE Annual International Electron Devices Meeting San Francisco, CA, 02-06 december 2017

Robinson S, Nevalainen J, Pinna G, Campalans A, Radicella JP and Guyon L
Incorporating interaction networks into the determination of functionally related hit genes in genomic experiments with Markov random fields.
Bioinformatics, 2017, 33(14): I170-I179

Semenov S, Haguet V, Jeandey C and Antoni M
Experimental investigation of the evaporation of droplets in diamagnetic levitation.
Colloque Annuel du Groupement de recherche "Microgravité Fondamentale et Appliquée" (GDR MFA 2799), Fréjus, France, November 8-10, 2017

Sindikubwabo F, Ding S, Hussain T, Ortet P, Barakat M, Baumgarten S, Cannella D, Palencia A, Bougdour A, Belmudes L, Coute Y, Tardieux I, Botte CY, Scherf A and Hakimi MA
Modifications at K31 on the lateral surface of histone H4 contribute to genome structure and expression in apicomplexan parasites.
eLife, 2017, 6: Article number e29391

Sonntag E, Milbradt J, Svrlanska A, Strojan H, Häge S, Kraut A, Hesse AM, Amin B, Sonnewald U, Couté Y and Marschall M
Protein kinases responsible for the phosphorylation of the nuclear egress core complex of human cytomegalovirus.
Journal of General Virology, 2017, 98(10): 2569-2581

Sorigue D, Legeret B, Cuine S, Blangy S, Moulin S, Billon E, Richaud P, Brugiere S, Couté Y, Nurizzo D, Muller P, Brettel K, Pignol D, Arnoux P, Li-Beisson Y, Peltier G and Beisson F
An algal photoenzyme converts fatty acids to hydrocarbons.
Science, 2017, 357(6354): 903-907

Tarasova IA, Masselon CD, Gorshkov AV and Gorshkov MV
Correction: Predictive chromatography of peptides and proteins as a complementary tool for proteomics (Analyst, 2016, 141: 4816, 2016).
Analyst, 2017, 142(11): 2054-2054

Tarasova IA, Masselon CD, Gorshkov AV and Gorshkov MV
Reply to 'Comparison of peptide retention prediction algorithm in reversed-phase chromatography. Comment on "Predictive chromatography of peptides and proteins as a complementary tool for proteomics"', by O. V. Krokhin, Analyst, 2017, 142, DOI: 10.1039/ c6an02510b.
Analyst, 2017, 142(11): 2052-2053

Van Lis R, Popek M, Couté Y, Kosta A, Drapier D, Nitschke W and Atteia A
Concerted up-regulation of aldehyde/alcohol dehydrogenase (ADHE) and starch in Chlamydomonas reinhardtii increases survival under dark anoxia.
Journal of Biological Chemistry, 2017, 292(6): 2395-2410

Vizcaino JA, Walzer M, Jimenez RC, Bittremieux W, Bouyssie D, Carapito C, Corrales F, Ferro M, Heck AJR, Horvatovich P, Hubalek M, Lane L, Laukens K, Levander F, Lisacek F, Novak P, Palmblad M, Piovesan D, Puhler A, Schwammle V, Valkenborg D, van Rijswijk M, Vondrasek J, Eisenacher M, Martens L and Kohlbacher O
A community proposal to integrate proteomics activities in ELIXIR.
F1000Research, 2017, 6(875)

Wieczorek S, Combes F, Lazar C, Giai Gianetto Q, Gatto L, Dorffer A, Hesse AM, Coute Y, Ferro M, Bruley C and Burger T
DAPAR & ProStaR: Software to perform statistical analyses in quantitative discovery proteomics.
Bioinformatics, 2017, 33(1): 135-136