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BGE publications in 2014

Published on 4 August 2022
Abeille F, Mittler F, Obeid P, Huet M, Kermarrec F, Dolega ME, Navarro F, Pouteau P, Icard B, Gidrol X, Agache V and Picollet-D'hahan N
Continuous microcarrier-based cell culture in a benchtop microfluidic bioreactor.
Lab on a Chip, 2014, 14(18): 3510-3518

Alban C, Tardif M, Mininno M, Brugière S, Gilgen A, Ma S, Mazzoleni M, Gigarel O, Martin-Laffon J, Ferro M and Ravanel S
Uncovering the protein lysine and arginine methylation network in Arabidopsis chloroplasts.
PLoS One, 2014, 9(4): e95512

Allier CP, Kesavan SV, Coutard JG, Cioni O, Momey F, Navarro F, Menneteau M, Chalmond B, Obeid P, Haguet V, David-Watine B, Dubrulle N, Shorte S, van der Sanden B, Di Natale C, Hamard L, Wion D, Dolega ME, Picollet-D'hahan N, Gidrol X and Dinten JM
Video lensfree microscopy of 2D and 3D cultures of cells. Proceedings of SPIE. Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues, 2014, Xii 8947: n°89471H

Biard D, Filhol O and Vandenbrouck Y
Tame the expression of the genes with DSIR.
Biofutur, 2014, (360): 52-55

Bounab Y, Hesse AM, Iannascoli B, Grieco L, Couté Y, Niarakis A, Roncagalli R, Lie E, Lam KP, Demangel C, Thieffry D, Garin J, Malissen B and Daëron M
Proteomic analysis of the SH2 domain-containing leukocyte protein of 76 kDa (SLP76) interactome in resting and activated primary mast cells.
Molecular and Cellular Proteomics, 2014, 13(2): 678

Chapel L, Burger T, Courty N and Lefevre S
PerTurbo manifold learning algorithm for weakly labeled hyperspectral image classification.
Ieee Journal of Selected Topics in Applied Earth Observations and Remote Sensing, 2014, 7(4): 1070-1078

Dolega ME, Wagh J, Gerbaud S, Kermarrec F, Alcaraz JP, Martin DK, Gidrol X and Picollet-D'hahan N
Facile bench-top fabrication of enclosed circular microchannels provides 3D confined structure for growth of prostate epithelial cells.
PLoS One, 2014, 9(6): e99416

Doustaly F, Combes F, Fiévet JB, Berthet S, Hugouvieux V, Bastien O, Aranjuelo I, Leonhardt N, Rivasseau C, Carrière M, Vavasseur A, Renou JP, Vandenbrouck Y and Bourguignon J
Uranium perturbs signaling and iron uptake response in Arabidopsis thaliana roots.
Metallomics, 2014, 6: 809-821

Eguether T, Ermolaeva MA, Zhao Y, Bonnet MC, Jain A, Pasparakis M, Courtois G and Tassin AM
The deubiquitinating enzyme CYLD controls apical docking of basal bodies in ciliated epithelial cells.
Nature Communications, 2014, 5: 4585

Elsen S, Huber P, Bouillot S, Couté Y, Fournier P, Dubois Y, Timsit JF, Maurin M and Attrée I
A Type III Secretion negative clinical strain of Pseudomonas aeruginosa employs a two-partner secreted Exolysin to induce hemorrhagic pneumonia.
Cell Host & Microbe, 2014, 15(2): 164-176

Engel E, Viargues P, Mortier M, Taillebourg E, Couté Y, Thevenon D and Fauvarque MO
Identifying USPs regulating immune signals in Drosophila: USP2 deubiquitinates Imd and promotes its degradation by interacting with the proteasome.
Cell Communication and Signaling, 2014, 12(1): 41

Estellon J, Ollagnier de Choudens S, Smadja M, Fontecave M and Vandenbrouck Y
An integrative computational model for large-scale identification of metalloproteins in microbial genomes: A focus on iron-sulfur cluster proteins.
Metallomics, 2014, 6(10): 1913-1930

Fauvarque MO
Small flies to tackle big questions: Assaying complex bacterial virulence mechanisms using Drosophila melanogaster.
Cellular Microbiology, 2014, 16(6): 824-833

Forterre A, Jalabert A, Berger E, Baudet M, Chikh K, Errazuriz E, De Larichaudy J, Chanon S, Weiss-Gayet M, Hesse AM, Record M, Geloen A, Lefai E, Vidal H, Couté Y and Rome S
Proteomic analysis of C2C12 myoblast and myotube exosome-like vesicles: A new paradigm for myoblast-myotube cross talk?
PLoS One, 2014, 9(1): e84153

Gatto L, Breckels LM, Burger T, Nightingale DJ, Groen AJ, Campbell C, Nikolovski N, Mulvey CM, Christoforou A, Ferro M and Lilley KS
A foundation for reliable spatial proteomics data analysis.
Molecular & Cellular Proteomics, 2014, 13(8): 1937-1952

Gatto L, Breckels LM, Wieczorek S, Burger T and Lilley KS
Mass-spectrometry-based spatial proteomics data analysis using pRoloc and pRolocdata.
Bioinformatics, 2014, 30(9): 1322-1324

Ghorbel I, Bertacchi N and Haguet V
Parallelized contact imaging and automated analysis of cell migration dynamics. Proceedings of the 37th International Meeting of the German Society for Cell Biology (DGZ), Ratisbonne, Germany, March 18-21, 2014, pp. 71

Graindorge M, Giustini C, Kraut A, Moyet L, Curien G and Matringe M
Three different classes of aminotransferases evolved prephenate aminotransferase functionality in arogenate-competent microorganisms.
Journal of Biological Chemistry, 2014, 289(6): 3198-3208

Griffin R, Binari R and Perrimon N
Genetic odyssey to generate marked clones in Drosophila mosaics.
Proceedings of the National Academy of Sciences, USA, 2014, 111(13): 4756-4763

Hardré H, Kuhn L, Albrieux C, Jouhet J, Michaud M, Seigneurin-Berny D, Falconet D, Block MA and Maréchal E
The selective biotin tagging and thermolysin proteolysis of chloroplast outer envelope proteins reveals information on protein topology and association into complexes.
Frontiers in Plant Science, 2014, 5: 203

Kesavan SV, Momey F, Cioni O, David-Watine B, Dubrulle N, Shorte S, Sulpice E, Freida D, Chalmond B, Dinten JM, Gidrol X and Allier C
High-throughput monitoring of major cell functions by means of lensfree video microscopy.
Scientific Reports, 2014, 4: 5942

Lafaye C, Barbier E, Miscioscia A, Saint-Pierre C, Kraut A, Couté Y, Plo I, Gasparutto D, Ravanat J-L and Breton J
DNA binding of the p21 repressor ZBTB2 is inhibited by cytosine hydroxymethylation.
Biochemical and Biophysical Research Communications, 2014, 446(1): 341-346

Legendre M, Bartoli J, Shmakova L, Jeudy S, Labadie K, Adrait A, Lescot M, Poirot O, Bertaux L, Bruley C, Coute Y, Rivkina E, Abergel C and Claverie JM
Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology.
Proceedings of the National Academy of Sciences USA, 2014, 111(11): 4274-4279

Legres LG, Janin A, Masselon C and Bertheau P
Beyond laser microdissection technology: Follow the yellow brick road for cancer research.
American Journal of Cancer Research, 2014, 4(1): 1-28

Lemercier C
[Bacterial infections as seen from the eukaryotic genome: DNA double strand breaks, inflammation and cancer].
Medecine Science (Paris), 2014, 30(8-9): 758-764

Milbradt J, Kraut A, Hutterer C, Sonntag E, Schmeiser C, Ferro M, Wagner S, Lenac T, Claus C, Pinkert S, Hamilton ST, Rawlinson WD, Sticht H, Coute Y and Marschall M
Proteomic analysis of the multimeric nuclear egress complex of human cytomegalovirus.
Molecular & Cellular Proteomics, 2014, 13(8): 2132-2146

Murie C, Barette C, Lafanechère L and Nadon R
Control-Plate Regression (CPR) normalization for High-Throughput Screens with many active features.
Journal of Biomolecular Screen, 2014, 19(5): 661-671

Nguyen-Lefebvre AT, Leprun G, Morin V, Vinuelas J, Coute Y, Madjar JJ, Gandrillon O and Gonin-Giraud S
V-erbA generates ribosomes devoid of RPL11 and regulates translational activity in avian erythroid progenitors.
Oncogene, 2014, 33(12): 1581-1589

Niarakis A, Bounab Y, Grieco L, Roncagalli R, Hesse AM, Garin J, Malissen B, Daeron M and Thieffry D
Computational modeling of the main signaling pathways involved in mast cell activation In FC Receptors, Edited by Daeron M and Nimmerjahn F, Springer-Verlag Berlin, Current Topics in Microbiology and Immunology, 2014, 382: 69-93

Pasa-Tolié L and Masselon C
Shining a spotlight on intact proteins.
Proteomics, 2014, 14(10): 1125-1127

Rival A, Jary D, Delattre C, Fouillet Y, Castellan G, Bellemin-Comte A and Gidrol X
An EWOD-based microfluidic chip for single-cell isolation, mRNA purification and subsequent multiplex qPCR.
Lab on a Chip, 2014, 14(19):3739-3749

van Rooyen JM, Murat JB, Hammoudi PM, Kieffer-Jaquinod S, Coute Y, Sharma A, Pelloux H, Belrhali H and Hakimi MA
Assembly of the novel five-component apicomplexan multi-aminoacyl-tRNA synthetase complex is driven by the hybrid scaffold protein Tg-p43.
PLoS One, 2014, 9(2): e89487

Schild F, Kieffer-Jaquinod S, Palencia A, Cobessi D, Sarret G, Zubieta C, Jourdain A, Dumas R, Forge V, Testemale D, Bourguignon J and Hugouvieux V
Biochemical and biophysical characterization of the Selenium binding and reducing site in Arabidopsis thaliana homologue to mammals Selenium Binding Protein 1.
Journal of Biological Chemistry, 2014, 289(46): 31765-31776

Schvartz D, Coute Y and Sanchez JC
Quantitative proteomics reveals the link between minichromosome maintenance complex and glucose-induced proliferation of rat pancreatic INS-1E ß-cells.
Journal of Proteomics, 2014, 108: 163-170

Sukkurwala AQ, Martins I, Wang Y, Schlemmer F, Ruckenstuhl C, Durchschlag M, Michaud M, Senovilla L, Sistigu A, Ma Y, Vacchelli E, Sulpice E, Gidrol X, Zitvogel L, Madeo F, Galluzzi L, Kepp O and Kroemer G
Immunogenic calreticulin exposure occurs through a phylogenetically conserved stress pathway involving the chemokine CXCL8.
Cell Death and Differentiation, 2014, 21: 59-68

Taillebourg E, Schneider DS and Fauvarque MO
The Drosophila deubiquitinating enzyme dUSP36 acts in the hemocytes for tolerance to Listeria monocytogenes infections.
Journal of Innate Immunity, 2014, 6(5): 632-638

Tomizioli M, Lazar C, Brugiere S, Burger T, Salvi D, Gatto L, Moyet L, Breckels LM, Hesse AM, Lilley KS, Seigneurin-Berny D, Finazzi G, Rolland N and Ferro M
Deciphering thylakoid sub-compartments using a mass spectrometry-based approach.
Molecular and Cellular Proteomics, 2014, 13(8): 2147-2167

Trauchessec M, Jaquinod M, Bonvalot A, Brun V, Bruley C, Ropers D, de Jong H, Garin J, Bestel-Corre G and Ferro M
Mass spectrometry-based workflow for accurate quantification of Escherichia coli enzymes: How proteomics can play a key role in metabolic engineering.
Molecular & Cellular Proteomics, 2014, 13(4): 954-968

Vaillier C, Honegger T, Kermarrec F, Gidrol X and Peyrade D
Comprehensive analysis of human cells motion under an irrotational AC electric field in an electro-microfluidic chip.
PLoS One, 2014, 9(4): e95231

Wu N and Gidrol X
The wind rose of human keratinocyte cell fate.
Cellular and Molecular Life Sciences, 2014, 289(46): 31765-31776

Xiol J, Spinelli P, Laussmann MA, Homolka D, Yang Z, Cora E, Coute Y, Conn S, Kadlec J, Sachidanandam R, Kaksonen M, Cusack S, Ephrussi A and Pillai RS
RNA clamping by vasa assembles a piRNA amplifier complex on transposon transcripts.
Cell, 2014, 157(7): 1698-1711