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BGE publications in 2012

Published on 4 August 2022

Adrait A, Lebert D, Trauchessec M, Dupuis A, Louwagie M, Masselon C, Jaquinod M, Chevalier B, Vandenesch F, Garin J, Bruley C and Brun V
Development of a protein standard absolute quantification (PSAQ™) assay for the quantification of Staphylococcus aureus enterotoxin A in serum.
Journal of Proteomics, 2012, 75(10): 3041-3049

Babot M, Blancard C, Pelosi L, Lauquin GJ and Trézéguet V
The transmembrane prolines of the mitochondrial ADP/ATP carrier are involved in nucleotide binding and transport and its biogenesis.
Journal of Biological Chemistry, 2012, 287(13): 10368-10378

Bandiera S, Barrey E, Ernoult-Lange M, Gidrol X, Henrion-Caude A, Huang L, Saint-Auret G and Weil D
[Mitochondria, microRNA and RNA interference].
Medecine Science (Paris), 2012, 28(1): 23-26

Barrey E, Jayr L, Mucher E, Gospodnetic S, Joly F, Benech P, Alibert O, Gidrol X, Mata X, Vaiman A and Guerin G
Transcriptome analysis of muscle in horses suffering from recurrent exertional rhabdomyolysis revealed energetic pathway alterations and disruption in the cytosolic calcium regulation.
Animal Genetics, 2012, 43(3): 271-281

Boussaoud A, Fonteille I, Collier G, Kermarrec F, Vermont F, Tresallet E, De Waard M, Arnoult C and Picollet-D’hahan N
A miniaturized planar patch-clamp system for transportable use.
Biosensors and Bioelectronics, 2012, 32(1): 96–103

Bruley C, Dupierris V, Salvi D, Rolland N and Ferro M
AT_CHLORO - A chloroplast database dedicated to sub-plastidial localization.
Frontiers in Plant Science, 2012, 3: 205

Burger T and Destercke S
Random generation of mass functions: A short howto In Belief Functions: Theory and Applications, Edited by Denoeux T and Masson MH. Advances in Intelligent and Soft Computing, 2012, vol.164, pp 145-152

Camara D, Bisanz C, Barette C, Van Daele J, Human E, Barnard B, Van Der Straeten D, Stove CP, Lambert WE, Douce R, Maréchal E, Birkholtz LM, Cesbron-Delauw MF, Dumas R and Rébeillé F
Inhibition of p-aminobenzoate and folate syntheses in plants and apicomplexan parasites by natural product rubreserine
Journal of Biological Chemistry, 2012, 287(26): 22367-22376

Camelo S, Raoul W, Lavalette S, Calippe B, Cristofaro B, Levy O, Houssier M, Sulpice E, Jonet L, Klein C, Devevre E, Thuret G, Duarte A, Eichmann A, Leconte L, Guillonneau X and Sennlaub F
Delta-like 4 inhibits choroidal neovascularization despite opposing effects on vascular endothelium and macrophages.
Angiogenesis, 2012, 15(4): 609-622
Erratum to: Delta-like 4 inhibits choroidal neovascularization despite opposing effects on vascular endothelium and macrophages.

Destercke S and Burger T
Revisiting the notion of conflicting belief functions In Belief Functions: Theory and Applications, Edited by Denoeux T and Masson MH. Advances in Intelligent and Soft Computing, 2012, vol.164, pp 153-160

de Bentzmann S, Giraud C, Bernard CS, Calderon V, Ewald F, Plesiat P, Nguyen C, Grunwald D, Attree I, Jeannot K, Fauvarque MO and Bordi C
Unique biofilm signature, drug susceptibility and decreased virulence in Drosophila through the Pseudomonas aeruginosa two-component system PprAB.
PLoS Pathogens, 2012, 8(11): e1003052

Fais S and Fauvarque MO
TM9 and cannibalism: How to learn more about cancer by studying amoebae and invertebrates.
Trends in Molecular Medicine, 2012, 18(1): 4-5

Filhol O, Ciais D, Lajaunie C, Charbonnier P, Foveau N, Vert JP and Vandenbrouck Y
DSIR: Assessing the design of highly potent siRNA by testing a set of cancer-relevant target genes.
PLoS One, 2012, 7(10): e48057

Forestier A, Sarrazy F, Caillat S, Vandenbrouck Y and Sauvaigo S
Functional DNA repair signature of cancer cell lines exposed to a set of cytotoxic anticancer drugs using a multiplexed enzymatic repair assay on biochip.
PLoS One, 2012, 7(12): e51754

Ghenim L, Kaji H, Nishizawa M and Gidrol X
Impedance sensing of biological processes in mammalian cells In Integrated Biomaterials for Biomedical Technology, Edited by Ramalingam M, Tiwari A, Ramakrishna S and Kobayashi H, Wiley, 2012, pp. 293-308

Govin J, Gaucher J, Ferro M, Debernardi A, Garin J, Khochbin S and Rousseaux S
Proteomic strategy for the identification of critical actors in reorganization of the post-meiotic male genome.
Molecular Human Reproduction, 2012, 18(1): 1-13

Greco A, Arata L, Soler E, Gaume X, Couté Y, Hacot S, Callé A, Monier K, Epstein AL, Sanchez JC, Bouvet P and Diaz JJ
Nucleolin interacts with US11 protein of herpes simplex virus 1 and is involved in its trafficking.
Journal of Virology, 2012, 86(3): 1449-1457

Huang Y, Yoon SH, Heron SR, Masselon CD, Edgar JS, Turecek F and Goodlett DR
Surface acoustic wave nebulization produces ions with lower internal energy than electrospray ionization.
Journal of the American Society for Mass Spectrometry, 2012, 23(6): 1062-1070

Huillet C, Adrait A, Lebert D, Picard G, Trauchessec M, Louwagie M, Dupuis A, Hittinger L, Ghaleh B, Le Corvoisier P, Jaquinod M, Garin J, Bruley C and Brun V
Accurate quantification of cardiovascular biomarkers in serum using protein standard absolute quantification (PSAQ™) and selected reaction monitoring.
Molecular and Cellular Proteomics, 2012, 11(2): M111.008235

Ivaldi C, Martin BR, Kieffer-Jaquinod S, Chapel A, Levade T, Garin J and Journet A
Proteomic analysis of S-acylated proteins in human B cells reveals palmitoylation of the immune regulators CD20 and CD23.
PLoS One, 2012, 7(5): e37187

Jaquinod M, Trauchessec M, Huillet C, Louwagie M, Lebert D, Picard G, Adrait A, Dupuis A, Garin J, Brun V and Bruley C
Mass spectrometry-based absolute protein quantification: PSAQ™ strategy makes use of "noncanonical" proteotypic peptides.
Proteomics, 2012, 12(8): 1217-1221

Jézégou A, Llinares E, Anne C, Kieffer-Jaquinod S, O'Regan S, Aupetit J, Chabli A, Sagné C, Debacker C, Chadefaux-Vekemans B, Journet A, André B and Gasnier B
Heptahelical protein PQLC2 is a lysosomal cationic amino acid exporter underlying the action of cysteamine in cystinosis therapy.
Proceedings of the National Academy of Sciences, 2012, 109(50): E3434-3443

Journet A, Klein G, Brugiere S, Vandenbrouck Y, Chapel A, Kieffer S, Bruley C, Masselon C and Aubry L
Investigating the macropinocytic proteome of Dictyostelium amoebae by high-resolution mass spectrometry.
Proteomics, 2012, 12(2): 241-245

Kurowska M, Goudin N, Nehme NT, Court M, Garin J, Fischer A, de Saint Basile G and Ménasché G
Terminal transport of lytic granules to the immune synapse is mediated by the kinesin-1/Slp3/Rab27a complex. 
Blood, 2012, 119(17): 3879-3889

Lecourt S, Vanneaux V, Cras A, Freida D, Heraoui D, Herbi L, Caillaud C, Chomienne C, Marolleau JP, Belmatoug N and Larghero J
Bone marrow microenvironment in an in vitro model of Gaucher disease: Consequences of glucocerebrosidase deficiency.
Stem Cells Development, 2012, 21(2): 239-248

Liu J, Hébert C, Pham P, Sauter-Starace F, Haguet V, Livache T and Mailley P
Electrochemically induced maskless metal deposition on micropore wall.
Small, 2012, 8(9): 1345-1349

Liu J, Pham P, Haguet V, Sauter-Starace F, Leroy L, Roget A, Descamps E, Bouchet A, Buhot A, Mailley P and Livache T
Polarization-induced local pore-wall functionalization for biosensing: from micropore to nanopore.
Analytical Chemistry (Washington), 2012, 84(7): 3254-3261

Lo E, Soleilhac E, Martinez A, Lafanechère L and Nadon R
Intensity quantile estimation and mapping-a novel algorithm for the correction of image non-uniformity bias in HCS data.
Bioinformatics, 2012, 28(20): 2632-2639

Louwagie M, Kieffer-Jaquinod S, Dupierris V, Coute Y, Bruley C, Garin J, Dupuis A, Jaquinod M and Brun V
Introducing AAA-MS, a rapid and sensitive method for amino acid analysis using isotope dilution and high-resolution mass spectrometry.
Journal of Proteome Research, 2012, 11(7): 3929-3936

Lupo J, Conti A, Sueur C, Coly P-A, Couté Y, Hunziker W, Burmeister WP, Germi R, Manet E, Gruffat H, Morand P and Boyer V
Identification of new interacting partners of the shuttling protein ubinuclein (Ubn-1).
Experimental Cell Research, 2012, 318(5): 509-520

Menger L, Vacchelli E, Adjemian S, Martins I, Ma Y, Shen S, Yamazaki T, Sukkurwala AQ, Michaud M, Mignot G, Schlemmer F, Sulpice E, Locher C, Gidrol X, Ghiringhelli F, Modjtahedi N, Galluzzi L, André F, Zitvogel L, Kepp O and Kroemer G
Cardiac glycosides exert anticancer effects by inducing immunogenic cell death.
Science Translational Medicine, 2012, 4(143): 143ra99

Merle N, Féraud O, Gilquin B, Hubstenberger A, Kieffer-Jacquinot S, Assard N, Bennaceur-Griscelli A, Honnorat J and Baudier J
ATAD3B is a human embryonic stem cell specific mitochondrial protein, re-expressed in cancer cells, that functions as dominant negative for the ubiquitous ATAD3A.
Mitochondrion, 2012, 12(4): 441-448

Mininno M, Brugiere S, Pautre V, Gilgen A, Ma S, Ferro M, Tardif M, Alban C and Ravanel S
Characterization of chloroplastic fructose 1,6-bisphosphate aldolases as lysine-methylated proteins in plants.
Journal of Biological Chemistry, 2012, 287(25): 21034-21044

Natarajan B, Genovese L, Casida ME, Deutsch T, Burchak ON, Philouze C and Balakirev MY
Wavelet-based linear-response time-dependent density-functional theory.
Chemical Physics, 2012, 402: 29–40

Navarro FP, Berger M, Guillermet S, Josserand V, Guyon L, Neumann E, Vinet F and Texier I
Lipid nanoparticule vectorization of indocyanine green improves fluorescence imaging for tumor diagnosis and lymph node resection.
Journal of Biomedical Nanotechnology, 2012, 8(5): 730-741

Navarro F, Sulpice E and Gidrol X
Des nanovecteurs pour l’ARN interférence thérapeutique.
Biofutur, 2012, 31(333): 30-31

Ozeir M, Xie LX, Chehade MH, Tang JY, Chen JY, Kieffer-Jaquinod S, Fontecave M, Clarke CF and Pierrel F
In vivo accumulation of coenzyme Q biosynthetic intermediates and aminated analogs in the yeast Saccharomyces cerevisiae.
Biochimica et Biophysica Acta (BBA) - Bioenergetics, 2012, 1817, Supplement: S92

Ozenne V, Bauer F, Salmon L, Huang JR, Jensen MR, Segard S, Bernado P, Charavay C and Blackledge M
Flexible-meccano: A tool for the generation of explicit ensemble descriptions of intrinsically disordered proteins and their associated experimental observables.
Bioinformatics, 2012, 28(11): 1463-1470

Paik YK, Omenn GS, Uhlen M, Hanash S, Marko-Varga G, Aebersold R, Bairoch A, Yamamoto T, Legrain P, Lee HJ, Na K, Jeong SK, He F, Binz PA, Nishimura T, Keown P, Baker MS, Yoo JS, Garin J, Archakov A, Bergeron J, Salekdeh GH and Hancock WS
Standard guidelines for the chromosome-centric human proteome project.
Journal of Proteome Research, 2012, 11(4): 2005-2013

Peña-Diaz P, Pelosi L, Ebikeme C, Colasante C, Gao F, Bringaud F and Voncken F
Functional characterization of TbMCP5, a conserved and essential ADP/ATP carrier present in the mitochondrion of the human pathogen Trypanosoma brucei.
Journal of Biological Chemistry, 2012, 287(50): 41861-41874

Picard G, Lebert D, Louwagie M, Adrait A, Huillet C, Vandenesch F, Bruley C, Garin J, Jaquinod M and Brun V
PSAQ standards for accurate MS-based quantification of proteins: From the concept to biomedical applications.
Journal of Mass Spectrometry, 2012, 47(10): 1353-1363

Prudent R, Vassal-Stermann E, Nguyen CH, Pillet C, Martinez A, Prunier C, Barette C, Soleilhac E, Filhol O, Beghin A, Valdameri G, Honore S, Aci-Seche S, Grierson D, Antonipillai J, Li R, Di Pietro A, Dumontet C, Braguer D, Florent JC, Knapp S, Bernard O and Lafanechere L
Pharmacological inhibition of LIM kinase stabilizes microtubules and inhibits neoplastic growth.
Cancer Research, 2012, 72(17): 4429-4439

Rey M, Forest E and Pelosi L
Exploring the conformational dynamics of the bovine ADP/ATP carrier in mitochondria.
Biochemistry, 2012, 51: 9727-9735

Sampson CJ, Valanne S, Fauvarque MO, Hultmark D, Rämet M and Williams MJ
The RhoGEF Zizimin-related acts in the Drosophila cellular immune response via the Rho GTPases Rac2 and Cdc42.
Developmental and Comparative Immunology, 2012, 38(1): 160–168

Schvartz D, Couté Y, Brunner Y, Wollheim CB and Sanchez JC
Modulation of neuronal pentraxin 1 expression in rat pancreatic ß-cells submitted to chronic glucotoxic stress.
Molecular and Cellular Proteomics, 2012, 11(8): 244-254

Taillebourg E, Gregoire I, Viargues P, Jacomin AC, Thevenon D, Faure M and Fauvarque MO
The deubiquitinating enzyme USP36 controls selective autophagy activation by ubiquitinated proteins.
Autophagy, 2012, 8(5): 767-779

Tarasova IA, Perlova TY, Pridatchenko ML, Goloborod’ko AA, Levitsky LI, Evreinov VV, Guryca V, Masselon CD, Gorshkov AV and Gorshkov MV
Inversion of chromatographic elution orders of peptides and its importance for proteomics.
Journal of Analytical Chemistry, 2012, 67(13): 1014–1025

Tardif M, Atteia A, Specht M, Cogne G, Rolland N, Brugiere S, Hippler M, Ferro M, Bruley C, Peltier G, Vallon O and Cournac L
PredAlgo, a new subcellular localization prediction tool dedicated to green algae.
Molecular Biology and Evolution, 2012, 29(12): 3625-3639

Tarrago L, Kieffer-Jaquinod S, Lamant T, Marcellin M, Garin J, Rouhier N and Rey P
Affinity chromatography: A valuable strategy to isolate substrates of methionine sulfoxide reductases?
Antioxidants & Redox Signaling, 2012, 16: 79-84

Wade A, Thomas C, Kalmar B, Terenzio M, Garin J, Greensmith L and Schiavo G
Activated leukocyte cell adhesion molecule modulates neurotrophin signaling.
Journal of Neurochemistry, 2012, 121(4): 575-586

Wu N, Rollin J, Masse I, Lamartine J and Gidrol X
p63 regulates human keratinocyte proliferation via MYC-regulated gene network and differentiation commitment through cell adhesion-related gene network.
Journal of Biological Chemistry, 2012, 287(8): 5627-5638

Wu N, Sulpice E, Obeid P, Benzina S, Kermarrec F, Combe S and Gidrol X
The miR-17 family links p63 protein to MAPK signaling to promote the onset of human keratinocyte differentiation.
PloS One, 2012, 7(9): e45761

Xie LX, Ozeir M, Tang JY, Chen JY, Kieffer-Jaquinod S, Fontecave M, Clarke CF and Pierrel F
Over-expression of the Coq8 kinase in Saccharomyces cerevisiae coq null mutants allows for accumulation of diagnostic intermediates of the Coenzyme Q6 biosynthetic pathway.
Journal of Biological Chemistry, 2012, 287(28): 23571-23581