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Publications du laboratoire en 2018

Publié le 4 août 2022
Abulfaraj AA, Mariappan K, Bigeard J, Manickam P, Blilou I, Guo X, Al-Babili S, Pflieger D, Hirt H and Rayapuram N
The Arabidopsis homolog of human G3BP1 is a key regulator of stomatal and apoplastic immunity.
Life Science Alliance, 2018, 1(2): e201800046

Adam C, Guerois R, Citarella A, Verardi L, Adolphe F, Beneut C, Sommermeyer V, Ramus C, Govin J, Coute Y and Borde V
The PHD finger protein Spp1 has distinct functions in the Set1 and the meiotic DSB formation complexes.
PLoS Genetics, 2018, 14(2): e1007223

d'Alessandro J, Mas L, Aubry L, Rieu JP, Riviere C and Anjard C
Collective regulation of cell motility using an accurate density-sensing system.
Journal of the Royal Society Interface, 2018, 15(140): Article Number 20180006

Allier C, Vincent R, Navarro F, Menneteau M, Ghenim L, Gidrol X, Bordy T, Herve L, Cioni O, Bardin S, Bornens M, Usson Y and Morales S
Dynamic quantitative analysis of adherent cell cultures by means of lens-free video microscopy.
Proceedings of the Conference on Quantitative Phase Imaging IV, Popescu G and Park Y Eds, 2018, vol 10503, 12 p.

Allier C, Vincent R, Navarro F, Menneteau M, Ghenim L, Gidrol X, Bordy T, Herve L, Cioni O, Bardin S, Bornens M, Usson Y and Morales S
Lens-free video microscopy for the dynamic and quantitative analysis of adherent cell culture.
Journal of Visualized Experiments: JoVE, 2018, (132)

Berdeu A, Laperrousaz B, Bordy T, Mandula O, Morales S, Gidrol X, Picollet-D'hahan N and Allier C
Lens-free microscopy for 3D + time acquisitions of 3D cell culture.
Scientific Reports, 2018, 8(1): 16135

Berdeu A, Laperrousaz B, Bordy T, Morales S, Gidrol X, Picollet-D'Hahan N and Allier C
3D+time acquisitions of 3D cell culture by means of lens-free tomographic microscopy.
Proceedings of the Progress in Biomedical Optics and Imaging - Proceedings of SPIE, vol 10499, Article number 1049909

Burger T
Gentle introduction to the statistical foundations of false discovery rate in quantitative proteomics.
Journal of Proteome Research, 2018, 17(1): 12-22

Cortes S, Barette C, Beroud R, De Waard M and Schaack B
Functional characterization of cell-free expressed Kv1.3 channel using a voltage-sensitive fluorescent dye.
Protein Expression and Purification, 2018, 145: 94-99

Courtois G and Fauvarque MO
The many roles of ubiquitin in NF-ΚB signaling.
Biomedicines, 2018, 6(2): Article number 43

Crespo-Yanez X, Aguilar-Gurrieri C, Jacomin AC, Journet A, Mortier M, Taillebourg E, Soleilhac E, Weissenhorn W and Fauvarque MO
CHMP1B is a target of USP8/UBPY regulated by ubiquitin during endocytosis.
PLoS Genetics, 2018, 14(6): e1007456

Dominguez-Medina S, Fostner S, Defoort M, Sansa M, Stark AK, Halim MA, Vernhes E, Gely M, Jourdan G, Alava T, Boulanger P, Masselon C and Hentz S
Neutral mass spectrometry of virus capsids above 100 megadaltons with nanomechanical resonators.
Science (New York, N.Y.), 2018, 362(6417): 918-22

Eymard-Vernain E, Coute Y, Adrait A, Rabilloud T, Sarret G and Lelong C
The poly-gamma-glutamate of Bacillus subtilis interacts specifically with silver nanoparticles.
PLoS One, 2018, 13(5): Article number e0197501

Fröhlich T, Hahn F, Belmudes L, Leidenberger M, Friedrich O, Kappes B, Couté Y, Marschall M and Tsogoeva SB
Synthesis of artemisinin-derived dimers, trimers and dendrimers: Investigation of their antimalarial and antiviral activities including putative mechanisms of action.
Chemistry - A European Journal, 2018, 24(32): 8103-8113

Garnaud C, Garcia-Oliver E, Wang Y, Maubon D, Bailly S, Despinasse Q, Champleboux M, Govin J and Cornet M
The Rim pathway mediates antifungal tolerance in Candida albicans through newly identified Rim101 transcriptional targets including Hsp90 and Ipt1.
Antimicrobial Agents and Chemotherapy, 2018, 62(3): article number e01785-17

Gerboth S, Frittoli E, Palamidessi A, Baltanas FC, Salek M, Rappsilber J, Giuliani C, Troglio F, Rolland Y, Pruneri G, Kreutmair S, Pallavicini I, Zobel M, Cinquanta M, Minucci S, Gomez C, Santos E, Illert AL and Scita G
Phosphorylation of SOS1 on tyrosine 1196 promotes its RAC GEF activity and contributes to BCR-ABL leukemogenesis.
Leukemia, 2018, 32(3): 820-827

González-Torres A, Bañuelos-Villegas EG, Martínez-Acuña N, Sulpice E, Gidrol X and Alvarez-Salas LM
MYPT1 is targeted by miR-145 inhibiting viability, migration and invasion in 2D and 3D HeLa cultures.
Biochemical and Biophysical Research Communications, 2018, 507(1-4): 348-54

Govin J, Barral S, Morozumi Y, Hoghoughi N, Buchou T, Rousseaux S and Khochbin S
Characterization of post-meiotic male germ cell genome organizational states.
Methods in Molecular Biology, 2018, 1832: 293-307

Hahn F, Hutterer C, Henry C, Hamilton ST, Strojan H, Kraut A, Schulte U, Schütz M, Kohrt S, Wangen C, Pfizer J, Couté Y, Rawlinson WD, Strobl S and Marschall M
Novel cytomegalovirus-inhibitory compounds of the class pyrrolopyridines show a complex pattern of target binding that suggests an unusual mechanism of antiviral activity.
Antiviral Research, 2018, 159: 84-94

He H, Brenier-Pinchart MP, Braun L, Kraut A, Touquet B, Coute Y, Tardieux I, Hakimi MA and Bougdour A
Characterization of a Toxoplasma effector uncovers an alternative GSK3/beta-catenin-regulatory pathway of inflammation.
eLife, 2018, 7: Article Number e39887

Jacob L, Combes F and Burger T
PEPA test: Fast and powerful differential analysis from relative quantitative proteomics data using shared peptides.
Biostatistics, 2018, kxy021

Jacomin AC, Taillebourg E and Fauvarque MO
Deubiquitinating enzymes related to autophagy: New therapeutic opportunities?
Cells, 2018, 7(8): 24

Jonckheere J, Deloulme JC, Dall'Igna G, Chauliac N, Pelluet A, Nguon AS, Lentini C, Brocard J, Denarier E, Brugiere S, Coute Y, Heinrich C, Porcher C, Holtzmann J, Andrieux A, Suaud-Chagny MF and Gory-Faure S
Short- and long-term efficacy of electroconvulsive stimulation in animal models of depression: The essential role of neuronal survival.
Brain Stimulation, 2018, 11(6): 1336-47

El Kennani S, Adrait A, Permiakova O, Hesse AM, Ialy-Radio C, Ferro M, Brun V, Cocquet J, Govin J and Pflieger D
Systematic quantitative analysis of H2A and H2B variants by targeted proteomics.
Epigenetics and Chromatin, 2018, 11(1): Article number 2

El Kennani S, Crespo M, Govin J and Pflieger D
Proteomic analysis of histone variants and their PTMs: Strategies and pitfalls.
Proteomes, 2018, 6(3): Article number 29

Lacombe M, Marie-Desvergne C, Combes F, Kraut A, Bruley C, Vandenbrouck Y, Chamel Mossuz V, Coute Y and Brun V
Proteomic characterization of human exhaled breath condensate.
Journal of Breath Research, 2018, 12(2): 021001

Laperrousaz B, Porte S, Gerbaud S, Härmä V, Kermarrec F, Hourtane V, Bottausci F, Gidrol X and Picollet-D’hahan N
Direct transfection of clonal organoids in Matrigel microbeads: A promising approach toward organoid-based genetic screens.
Nucleic Acids Research, 2018, 46(12): e70

Legendre M, Fabre E, Poirot O, Jeudy S, Lartigue A, Alempic JM, Beucher L, Philippe N, Bertaux L, Christo-Foroux E, Labadie K, Couté Y, Abergel C and Claverie JM
Diversity and evolution of the emerging Pandoraviridae family.
Nature Communications, 2018, 9(1): Article number 2285

Mas L, Cieren A, Delphin C, Journet A and Aubry L
Calcium influx mediates the chemoattractant-induced translocation of the arrestin-related protein AdcC in Dictyostelium.
Journal of Cell Science, 2018, 131(19): UNSP jcs207951

Mato JM, Elortza F, Lu SC, Brun V, Paradela A and Corrales FJ
Liver cancer-associated changes to the proteome: What deserves clinical focus?
Expert Review of Proteomics, 2018, 15(9): 749-56

De Muyt A, Pyatnitskaya A, Andreani J, Ranjha L, Ramus C, Laureau R, Fernandez-Vega A, Holoch D, Girard E, Govin J, Margueron R, Coute Y, Cejka P, Guerois R and Borde V
A meiotic XPF-ERCC1-like complex recognizes joint molecule recombination intermediates to promote crossover formation.
Genes & Developement, 2018, 32(3-4): 283-296

Ouarné M, Bouvard C, Boneva G, Mallet C, Ribeiro J, Desroches-Castan A, Soleilhac E, Tillet E, Peyruchaud O and Bailly S
BMP9, but not BMP10, acts as a quiescence factor on tumor growth, vessel normalization and metastasis in a mouse model of breast cancer.
Journal of Experimental & Clinical Cancer Research, 2018, 37(1): 209

Petosa C, Govin J and Mietton F
[A new hope to fight invasive fungal infection].
Médecine Sciences, 2018, 34(2): 123-125

Picard MAL, Cosseau C, Ferre S, Quack T, Grevelding CG, Coute Y and Vicoso B
Evolution of gene dosage on the Z-chromosome of schistosome parasites.
eLife, 2018, 7: Article number e35684

Picollet-D'Hahan N, Laperrousaz B, Porte S, Obeid P, Tollance A, Kermarrec F, Belda-Marin C, Romero-Millan A, Haguet V, Martin DK and Gidrol X
Encapsulated organoids & organ-on-a-chip platform for cancer modeling.
Proceedings of the Technical Digest - 63rd IEEE International Electron Devices Meeting, IEDM 2017, vol Part F134366, pp. 10.16.11-10.16.14

Picollet-D’hahan N, Tollance A, Belda Marin C, Liguori L, Marquette C, Filhol-Cochet O, Vilgrain I, Laffitte G, Rivera F, Alcaraz JP, Thélu J, Nicoud O, Moufle-Milot T, Legues M, Bouamrani A, Mombrun A, Gilquin B, Gerbaud S, Obeid P, Kermarrec F, Gidrol X and Martin DK
3D polyelectrolyte scaffolds to mimic exocrine glands: A step towards a prostate-on-chip platform.
The EuroBiotech Journal, 2018, 2(4): 180-195

Polizzi S, Laperrousaz B, Perez-Reche FJ, Nicolini FE, Satta VM, Arneodo A and Argoul F
A minimal rupture cascade model for living cell plasticity.
New Journal of Physics, 2018, 20: Article Number 053057

Rayapuram N, Bigeard J, Alhoraibi H, Bonhomme L, Hesse AM, Vinh J, Hirt H and Pflieger D
Quantitative phosphoproteomic analysis reveals shared and specific targets of Arabidopsis mitogen-activated protein kinases (MAPKs) MPK3, MPK4, and MPK6.
Molecular & Cellular Proteomics, 2018, 17(1): 75-94

Roelants C, Giacosa S, Pillet C, Bussat R, Champelovier P, Bastien O, Guyon L, Arnoux V, Cochet C and Filhol O
Combined inhibition of PI3K and Src kinases demonstrates synergistic therapeutic efficacy in clear-cell renal carcinoma.
Oncotarget, 2018, 9(53): 30066-30078

Sage E, Sansa M, Fostner S, Defoort M, Gely M, Naik AK, Morel R, Duraffourg L, Roukes ML, Alava T, Jourdan G, Colinet E, Masselon C, Brenac A and Hentz S
Single-particle mass spectrometry with arrays of frequency-addressed nanomechanical resonators.
Nature Communications, 2018, 9(1): Article number 3283

Salvi D, Bournais S, Moyet L, Bouchnak I, Kuntz M, Bruley C and Rolland N
AT_CHLORO - The first step when looking for information about subplastidial localization of proteins. In: Plastids - Methods and Protocols. (E. Maréchal, Ed.), Humana Press, New-York, USA, Methods in Molecular Biology, 2018, 1829: 395-406

Shiota H, Barral S, Buchou T, Tan M, Couté Y, Charbonnier G, Reynoird N, Boussouar F, Gérard M, Zhu M, Bargier L, Puthier D, Chuffart F, Bourova-Flin E, Picaud S, Filippakopoulos P, Goudarzi A, Ibrahim Z, Panne D, Rousseaux S, Zhao Y and Khochbin S
Nut directs p300-dependent, genome-wide H4 hyperacetylation in male germ cells.
Cell Reports, 2018, 24(13): 3477-87.e6

Soleilhac E, Brillet-Guéguen L, Roussel V, Prudent R, Touquet B, Dass S, Aci-Sèche S, Kasam V, Barette C, Imberty A, Breton V, Vantard M, Horvath D, Botté C, Tardieux I, Roy S, Maréchal E and Lafanechère L
Specific targeting of plant and apicomplexa parasite tubulin through differential screening using in silico and assay-based approaches.
International Journal of Molecular Sciences, 2018, 19(10): Article number 3085

Volz R, Kim SK, Mi JN, Mariappan KG, Guo XJ, Bigeard J, Alejandro S, Pflieger D, Rayapuram N, Al-Babili S and Hirt H
The Trihelix transcription factor GT2-like 1 (GTL1) promotes salicylic acid metabolism, and regulates bacterial-triggered immunity.
PLoS Genetics, 2018, 14(10): Article Number e1007708

Wallez Y, Bouillot S, Soleilhac E, Huber P, Attrée I and Faudry E
CLIQ-BID: A method to quantify bacteria-induced damage to eukaryotic cells by automated live-imaging of bright nuclei.
Scientific Reports, 2018, 8(1): Article number 5